PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.045040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 624aa    MW: 67289.5 Da    PI: 7.2397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.045040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30352410259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Cucsa.045040.1 352 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 410
                     7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33336412IPR003657WRKY domain
SuperFamilySSF1182901.12E-27344412IPR003657WRKY domain
PROSITE profilePS5081129.677346412IPR003657WRKY domain
SMARTSM007741.2E-36351411IPR003657WRKY domain
PfamPF031062.1E-26353410IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MDKGWGLTLR DSEHQSIGFF SNKPPPPPPP PTLNSFQRMF QGLEFSGKLG HTDSTPDDNN  60
RLAVEVDFFS AKKRVVDDLE ADQDSKPTST TSIIKDDKAL TPPPPPTTSF NLVNTGLHLL  120
TANTGSDQST VDDGISSDGE DKRAKNELAQ LQVELQRMNA ENHKLRDMLS HVSNNYSSLH  180
MHLLSLMQQK QQQQNHPSEP AHQREIGGEK KSTEIKHEVG KVMVPRQFMD LGPSGNSNIG  240
ESEELLCNSS SDERTRSGSP LNINNNNNNT ETASKKRDHA EIMPPNSDHE NSKRSIPRED  300
SPESESQGWG PNHKTPRFNN SSNSKPLDQS TEATMRKARV SVRARSEAPM ISDGCQWRKY  360
GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMAMAS  420
TTTAAATMLL SGSMSSADHN LMNPNLLARA ILPCSTSMAT ISASAPFPTI TLDLTHTPNP  480
LQFQRPTAAP FQVPFPGGQP PSAAAQLPQV LGQALYNNQS KFSGLQLSHE MGANSSHLGH  540
HQITQPASPA QPGGASFADT LSAATAAITA DPNFTAALAA AISSIIGGTH SNNNSNTNTT  600
NNTTTNNNGS SNNNSKISSF PGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21338414176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134775.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-150WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLA0A0A0KJV20.0A0A0A0KJV2_CUCSA; Uncharacterized protein
STRINGVIT_10s0116g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-119WRKY family protein